Plasma metagenomic testing
Rapid, minimally invasive detection of difficult-to-diagnose infections
Plasma metagenomic sequencing is an innovative, minimally invasive approach used to detect microbial cell-free DNA (mcfDNA) from thousands of pathogens circulating throughout the body to identify systemic and deep-seated infections.
The Karius Spectrum™ test is an innovative assay that can identify more than 1,000 pathogens, including bacteria, fungi, parasites, and DNA viruses, with just one blood draw. With results typically available within one day of sample receipt, answers from Karius Spectrum may enable timely intervention, which is especially important for vulnerable, critically ill patients.
Plasma metagenomic test menu
Karius Spectrum
The Karius Spectrum uses metagenomic sequencing to detect pathogenic microorganisms associated with systemic and deep-seated infections that are difficult to diagnose. This novel, minimally invasive liquid biopsy technology provides faster and more comprehensive insights to guide targeted therapy. Karius Spectrum is especially useful in helping to diagnose infections associated with:
- Endocarditis
- Pneumonia
- Invasive fungal infections
- Fever of unknown origin
- Febrile neutropenia
- Sepsis
- Zoonoses
- Focal abscess
Key testing
- KDPLA | Karius Spectrum Direct, Plasma
- KPLA | Karius Spectrum, Plasma
Advantages
- Requires just one blood draw, which reduces the need for invasive procedures and enhances patient safety.1,2
- Karius Spectrum, when added to standard testing, can increase diagnostic yield.
- Able to detect genotypic bacterial antimicrobial resistance.
- Speeds up diagnosis of infection with one-day processing time.3,4,5
- Reporting of clinically relevant pathogens by quantification of mcfDNA concentration.
- Empowers clinicians to deliver more effective and personalized care.
Included pathogens
- Abiotrophia defectiva
- Acanthamoeba †
- Achromobacter denitrificans
- Achromobacter xylosoxidans
- Acidaminococcus intestini
- Acinetobacter baumannii*
- Acinetobacter bereziniae
- Acinetobacter calcoaceticus*
- Acinetobacter pittii
- Acinetobacter radioresistens
- Acinetobacter seifertii
- Acinetobacter soli
- Acinetobacter ursingii
- Acremonium chrysogenum †
- Actinobacillus suis †
- Actinobacillus ureae †
- Actinomadura latina
- Actinomadura madurae
- Actinomucor elegans †
- Actinomyces gerencseriae
- Actinomyces graevenitzii
- Actinomyces israelii
- Actinomyces massiliensis
- Actinomyces oris
- Actinomyces timonensis
- Actinomyces urogenitalis
- Actinomyces viscosus
- Aerococcus christensenii
- Aerococcus sanguinicola
- Aerococcus urinae
- Aerococcus viridans
- Aeromonas caviae
- Aeromonas hydrophila
- Aeromonas salmonicida
- Aeromonas schubertii
- Aeromonas trota (Aeromonas enteropelogenes)
- Aeromonas veronii
- Aggregatibacter actinomycetemcomitans †
- Aggregatibacter aphrophilus †
- Aggregatibacter segnis †
- Alcaligenes faecalis
- Aliarcobacter butzleri (Arcobacter butzleri)
- Aliarcobacter cryaerophilus (Arcobacter cryaerophilus)
- Alloiococcus otitis
- Alloscardovia omnicolens
- Alphapapillomavirus 1
- Alphapapillomavirus 10
- Alphapapillomavirus 11
- Alphapapillomavirus 14
- Alphapapillomavirus 2
- Alphapapillomavirus 3
- Alphapapillomavirus 4
- Alphapapillomavirus 5
- Alphapapillomavirus 6
- Alphapapillomavirus 7
- Alphapapillomavirus 8
- Alphapapillomavirus 9
- Alternaria arborescens
- Anaerobiospirillum succiniciproducens
- Anaerococcus lactolyticus
- Anaerococcus prevotii
- Anaerococcus tetradius
- Anaeroglobus geminatus
- Anaerostipes caccae
- Anaplasma phagocytophilum
- Ancylostoma ceylanicum
- Ancylostoma duodenale
- Angiostrongylus cantonensis
- Angiostrongylus costaricensis
- Anisakis simplex
- Anncaliia algerae
- Apophysomyces elegans †
- Apophysomyces trapeziformis †
- Apophysomyces variabilis †
- Arachnia propionica (Propionibacterium propionicum)
- Arcanobacterium haemolyticum
- Ascaris
- Aspergillus aculeatus †
- Aspergillus brasiliensis †
- Aspergillus calidoustus †
- Aspergillus candidus †
- Aspergillus chevalieri †
- Aspergillus clavatus †
- Aspergillus fischeri †
- Aspergillus flavus †
- Aspergillus fumigatus †
- Aspergillus glaucus †
- Aspergillus lentulus †
- Aspergillus luchuensis †
- Aspergillus nidulans †
- Aspergillus niger †
- Aspergillus nomiae †
- Aspergillus novofumigatus †
- Aspergillus oryzae †
- Aspergillus persii †
- Aspergillus sclerotiorum †
- Aspergillus terreus †
- Aspergillus thermomutatus †
- Aspergillus tubingensis †
- Aspergillus udagawae †
- Aspergillus ustus †
- Aspergillus versicolor †
- Aspergillus welwitschiae
- Aspergillus wentii †
- Atlantibacter hermannii (Escherichia hermannii)
- Aureimonas altamirensis
- Aureobasidium melanogenum
- Azospirillum brasilense (Roseomonas fauriae)
- Babesia divergens
- Babesia microti
- Bacillus cereus
- Bacillus mycoides
- Bacillus pumilus
- Bacteroides caccae
- Bacteroides faecis
- Bacteroides fragilis
- Bacteroides ovatus
- Bacteroides pyogenes
- Bacteroides thetaiotaomicron
- Bacteroides uniformis
- Balamuthia mandrillaris †
- Bartonella alsatica
- Bartonella ancashensis
- Bartonella bacilliformis
- Bartonella clarridgeiae
- Bartonella doshiae
- Bartonella elizabethae
- Bartonella grahamii
- Bartonella henselae
- Bartonella koehlerae
- Bartonella quintana
- Bartonella rochalimae
- Bartonella schoenbuchensis
- Bartonella tribocorum
- Bartonella vinsonii
- Basidiobolus meristosporus
- Baylisascaris procyonis
- Beauveria bassiana †
- Bergeyella zoohelcum
- Betapapillomavirus 1
- Betapapillomavirus 2
- Betapapillomavirus 3
- Betapapillomavirus 4
- Betapapillomavirus 5
- Bifidobacterium dentium
- Bifidobacterium scardovii
- BK polyomavirus (Betapolyomavirus hominis)
- Blastocystis hominis
- Blastomyces dermatitidis †
- Blastomyces gilchristii †
- Blastomyces percursus †
- Blastomyces silverae (Emmonsia parva) †
- Bordetella avium
- Bordetella bronchialis
- Bordetella bronchiseptica
- Bordetella flabilis
- Bordetella hinzii
- Bordetella holmesii
- Bordetella parapertussis
- Bordetella pertussis
- Bordetella petrii
- Bordetella trematum
- Borealpox virus
- Borrelia crocidurae
- Borrelia duttonii
- Borrelia hermsii
- Borrelia hispanica
- Borrelia miyamotoi
- Borrelia parkeri
- Borrelia persica
- Borrelia recurrentis
- Borrelia turicatae
- Borreliella afzelii (Borrelia afzelii)
- Borreliella burgdorferi (Borrelia burgdorferi)
- Borreliella garinii (Borrelia garinii)
- Borreliella mayonii (Borrelia mayonii)
- Brachyspira pilosicoli
- Brevibacillus brevis
- Brevibacillus laterosporus
- Brevibacterium casei
- Brevundimonas vesicularis
- Brucella abortus
- Brucella anthropi (Ochrobactrum anthropi)
- Brucella canis
- Brucella intermedia (Ochrobactrum intermedium)
- Brucella melitensis
- Brucella suis
- Brugia malayi
- Budvicia aquatica
- Bulleidia extructa
- Burkholderia cepacia complex
- Burkholderia gladioli
- Burkholderia glumae
- Burkholderia mallei
- Burkholderia pseudomallei
- Burkholderia thailandensis
- Campylobacter coli
- Campylobacter concisus
- Campylobacter curvus
- Campylobacter fetus
- Campylobacter gracilis
- Campylobacter hyointestinalis
- Campylobacter jejuni
- Campylobacter lari
- Campylobacter mucosalis
- Campylobacter showae
- Campylobacter sputorum
- Campylobacter upsaliensis
- Campylobacter ureolyticus
- Candida albicans †
- Candida auris †
- Candida bracarensis †
- Candida dubliniensis †
- Candida duobushaemulonis †
- Candida glabrata †
- Candida haemulonis †
- Candida intermedia †
- Candida nivariensis †
- Candida orthopsilosis †
- Candida parapsilosis †
- Candida pseudohaemulonis †
- Candida sojae †
- Candida tropicalis †
- Capnocytophaga canimorsus
- Capnocytophaga cynodegmi
- Capnocytophaga gingivalis
- Capnocytophaga granulosa
- Capnocytophaga haemolytica
- Capnocytophaga ochracea
- Capnocytophaga sputigena
- Cardiobacterium hominis
- Cardiobacterium valvarum
- Cedecea davisae
- Cedecea neteri
- Chaetomium globosum
- Chlamydia pneumoniae
- Chlamydia psittaci
- Chlamydia trachomatis
- Christensenella hongkongensis (Catabacter hongkongensis)
- Chromobacterium haemolyticum
- Chromobacterium violaceum
- Chryseobacterium gleum
- Chryseobacterium indologenes
- Citrobacter amalonaticus
- Citrobacter braakii
- Citrobacter farmeri
- Citrobacter freundii
- Citrobacter koseri
- Citrobacter sedlakii
- Cladophialophora bantiana
- Cladophialophora carrionii
- Cladosporium cladosporioides
- Clavispora lusitaniae (Candida lusitaniae) †
- Clonorchis sinensis
- Clostridioides difficile (Clostridium difficile)
- Clostridium baratii
- Clostridium cadaveris
- Clostridium haemolyticum
- Clostridium innocuum
- Clostridium neonatale
- Clostridium novyi
- Clostridium paraputrificum
- Clostridium perfringens
- Clostridium tetani
- Coccidioides immitis †
- Coccidioides posadasii †
- Cokeromyces recurvatus †
- Colletotrichum gloeosporioides
- Colletotrichum graminicola
- Comamonas kerstersii
- Comamonas terrigena
- Conidiobolus coronatus
- Conidiobolus incongruus
- Corynebacterium accolens †
- Corynebacterium afermentans †
- Corynebacterium amycolatum †
- Corynebacterium argentoratense †
- Corynebacterium diphtheriae †
- Corynebacterium freiburgense †
- Corynebacterium freneyi †
- Corynebacterium glucuronolyticum †
- Corynebacterium jeikeium †
- Corynebacterium kroppenstedtii †
- Corynebacterium kutscheri †
- Corynebacterium lipophiloflavum †
- Corynebacterium massiliense †
- Corynebacterium matruchotii †
- Corynebacterium minutissimum †
- Corynebacterium otitidis (Turicella otitidis) †
- Corynebacterium propinquum †
- Corynebacterium pseudodiphtheriticum †
- Corynebacterium pseudotuberculosis †
- Corynebacterium riegelii †
- Corynebacterium simulans †
- Corynebacterium stationis †
- Corynebacterium striatum †
- Corynebacterium timonense †
- Corynebacterium tuscaniense †
- Corynebacterium ulcerans †
- Corynebacterium urealyticum †
- Corynebacterium ureicelerivorans †
- Corynebacterium xerosis †
- Corynespora cassiicola
- Cowpox virus †
- Coxiella burnetii
- Cronobacter sakazakii (Enterobacter sakazakii)
- Cryptococcus gattii VGI (Cryptococcus gattii)
- Cryptococcus gattii VGII (Cryptococcus deuterogattii)
- Cryptococcus gattii VGIII (Cryptococcus bacillisporus)
- Cryptococcus gattii VGIV (Cryptococcus tetragattii)
- Cryptococcus neoformans
- Cryptosporidium hominis
- Cryptosporidium meleagridis
- Cryptosporidium muris
- Cryptosporidium parvum
- Cryptosporidium ubiquitum
- Cunninghamella †
- Cupriavidus gilardii
- Cupriavidus metallidurans
- Cupriavidus pauculus
- Curvularia lunata
- Curvularia papendorfii (Bipolaris papendorfii)
- Cutaneotrichosporon cutaneum (Trichosporon cutaneum)
- Cutibacterium granulosum (Propionibacterium granulosum)
- Cutibacterium namnetense (Propionibacterium namnetense)
- Cyberlindnera fabianii (Hansenula fabianii) †
- Cyberlindnera jadinii (Candida utilis) †
- Cyclospora cayetanensis
- Cyphellophora europaea
- Cytomegalovirus (CMV)
- Debaryomyces fabryi †
- Debaryomyces hansenii (Candida famata) †
- Dermabacter hominis
- Dermatophilus congolensis
- Desulfomicrobium orale
- Dialister micraerophilus
- Dirofilaria immitis
- Dolosigranulum pigrum
- Dracunculus medinensis
- Dysgonomonas capnocytophagoides
- Dysgonomonas gadei
- Dysgonomonas mossii
- Echinococcus canadensis
- Echinococcus granulosus
- Echinococcus multilocularis
- Edwardsiella tarda
- Eggerthella lenta
- Ehrlichia canis
- Ehrlichia chaffeensis
- Ehrlichia muris
- Eikenella corrodens †
- Elizabethkingia anophelis
- Elizabethkingia meningoseptica
- Elizabethkingia miricola
- Emergomyces africanus
- Emergomyces orientalis
- Emergomyces pasteurianus
- Emmonsia crescens †
- Empedobacter brevis
- Empedobacter falsenii (Wautersiella falsenii)
- Encephalitozoon cuniculi
- Encephalitozoon hellem
- Encephalitozoon intestinalis
- Entamoeba dispar
- Entamoeba histolytica
- Enterobacter cloacae complex*
- Enterobius vermicularis
- Enterocloster clostridioformis (Clostridium clostridioforme)
- Enterococcus avium
- Enterococcus casseliflavus
- Enterococcus dispar
- Enterococcus durans
- Enterococcus faecalis*
- Enterococcus faecium*
- Enterococcus gallinarum
- Enterococcus gilvus
- Enterococcus hirae
- Enterococcus italicus
- Enterococcus mundtii
- Enterococcus pallens
- Enterococcus raffinosus
- Enterococcus thailandicus
- Enterocytozoon bieneusi
- Epstein-Barr virus (EBV)
- Erwinia billingiae
- Erysipelothrix rhusiopathiae
- Escherichia albertii
- Escherichia coli*
- Escherichia fergusonii
- Eubacterium nodatum
- Exophiala dermatitidis
- Exophiala mesophila
- Exophiala oligosperma
- Exophiala spinifera
- Exophiala xenobiotica
- Facklamia hominis
- Facklamia sourekii
- Fannyhessea vaginae (Atopobium vaginae)
- Fasciola hepatica
- Filifactor alocis
- Finegoldia magna
- Fonsecaea monophora
- Fonsecaea nubica
- Fonsecaea pedrosoi
- Francisella hispaniensis
- Francisella philomiragia
- Francisella tularensis
- Franconibacter helveticus
- Fusarium fujikuroi †
- Fusarium keratoplasticum
- Fusarium langsethiae †
- Fusarium metavorans †
- Fusarium nygamai †
- Fusarium oxysporum †
- Fusarium proliferatum †
- Fusarium sambucinum †
- Fusarium solani †
- Fusarium temperatum †
- Fusarium vanettenii (Nectria haematococca) †
- Fusarium verticillioides †
- Fusobacterium animalis
- Fusobacterium mortiferum
- Fusobacterium necrophorum
- Fusobacterium nucleatum
- Fusobacterium periodonticum
- Fusobacterium russii
- Fusobacterium ulcerans
- Fusobacterium varium
- Fusobacterium vincentii
- Gammapapillomavirus 1
- Gammapapillomavirus 10
- Gammapapillomavirus 11
- Gammapapillomavirus 12
- Gammapapillomavirus 13
- Gammapapillomavirus 14
- Gammapapillomavirus 15
- Gammapapillomavirus 16
- Gammapapillomavirus 17
- Gammapapillomavirus 19
- Gammapapillomavirus 2
- Gammapapillomavirus 21
- Gammapapillomavirus 3
- Gammapapillomavirus 4
- Gammapapillomavirus 5
- Gammapapillomavirus 6
- Gammapapillomavirus 7
- Gammapapillomavirus 8
- Gammapapillomavirus 9
- Gardnerella vaginalis
- Gemella bergeri
- Gemella haemolysans
- Gemella morbillorum
- Gemella sanguinis
- Geotrichum candidum †
- Giardia intestinalis (Giardia lamblia)
- Gleimia europaea (Actinomyces europaeus)
- Globicatella sanguinis
- Gordonia aichiensis †
- Gordonia bronchialis †
- Gordonia otitidis †
- Gordonia rubripertincta †
- Gordonia terrae †
- Gordonibacter pamelaeae
- Granulibacter bethesdensis
- Granulicatella adiacens
- Granulicatella elegans
- Haemophilus ducreyi †
- Haemophilus haemolyticus †
- Haemophilus influenzae †
- Haemophilus parahaemolyticus †
- Haemophilus parainfluenzae †
- Haemophilus paraphrohaemolyticus †
- Haemophilus quentini †
- Haemophilus sputorum †
- Hafnia alvei
- Hafnia paralvei
- Hanseniaspora uvarum †
- Helcococcus kunzii
- Helicobacter bilis †
- Helicobacter canadensis †
- Helicobacter cinaedi †
- Helicobacter felis †
- Helicobacter fennelliae †
- Helicobacter heilmannii †
- Helicobacter pylori †
- Herpes B virus
- Herpes simplex virus type 1 (HSV-1)
- Herpes simplex virus type 2 (HSV-2)
- Histoplasma capsulatum †
- Hortaea werneckii
- Human adenovirus A
- Human adenovirus B
- Human adenovirus C
- Human adenovirus D
- Human adenovirus E
- Human adenovirus F
- Human herpesvirus 6A
- Human herpesvirus 6B
- Human herpesvirus 7
- Human parvovirus B19
- Human polyomavirus 6 (Deltapolyomavirus sextihominis)
- Human polyomavirus 7 (Deltapolyomavirus septihominis)
- Hymenolepis diminuta
- Janibacter indicus
- Janibacter melonis
- JC polyomavirus (Betapolyomavirus secuhominis)
- Kaposi sarcoma-associated herpesvirus
- Kerstersia gyiorum
- Kingella denitrificans †
- Kingella kingae †
- Klebsiella aerogenes (Enterobacter aerogenes)*
- Klebsiella grimontii
- Klebsiella michiganensis
- Klebsiella oxytoca*
- Klebsiella pneumoniae*
- Klebsiella quasipneumoniae
- Klebsiella variicola
- Kluyvera ascorbata
- Kluyvera cryocrescens
- Kluyvera intermedia
- Kluyveromyces marxianus (Candida kefyr) †
- Kocuria rhizophila
- Kytococcus sedentarius
- Lancefieldella parvula (Atopobium parvulum)
- Lancefieldella rimae (Atopobium rimae)
- Laribacter hongkongensis
- Lawsonella clevelandensis †
- Leclercia adecarboxylata
- Legionella anisa †
- Legionella birminghamensis †
- Legionella bozemanae (Fluoribacter bozemanae) †
- Legionella cardiaca
- Legionella cherrii †
- Legionella cincinnatiensis †
- Legionella clemsonensis †
- Legionella dumoffii (Fluoribacter dumoffii) †
- Legionella feeleii †
- Legionella gormanii (Fluoribacter gormanii)
- Legionella hackeliae †
- Legionella jamestowniensis †
- Legionella jordanis †
- Legionella lansingensis †
- Legionella londiniensis †
- Legionella longbeachae †
- Legionella maceachernii (Tatlockia maceachernii)†
- Legionella micdadei (Tatlockia micdadei) †
- Legionella nagasakiensis
- Legionella norrlandica †
- Legionella oakridgensis †
- Legionella parisiensis †
- Legionella pneumophila †
- Legionella quinlivanii
- Legionella rubrilucens †
- Legionella sainthelensi †
- Legionella steelei †
- Legionella tucsonensis †
- Legionella wadsworthii †
- Legionella waltersii †
- Legionella worsleiensis †
- Leifsonia aquatica
- Leishmania aethiopica
- Leishmania amazonensis
- Leishmania braziliensis
- Leishmania donovani
- Leishmania infantum
- Leishmania major
- Leishmania mexicana
- Leishmania panamensis
- Leishmania tropica
- Lelliottia amnigena (Enterobacter amnigenus)
- Leminorella grimontii
- Leptospira borgpetersenii
- Leptospira broomii
- Leptospira fainei
- Leptospira interrogans
- Leptospira kirschneri
- Leptospira kmetyi
- Leptospira licerasiae
- Leptospira mayottensis
- Leptospira noguchii
- Leptospira santarosai
- Leptospira weilii
- Leptotrichia buccalis
- Leptotrichia wadei
- Leuconostoc citreum
- Leuconostoc mesenteroides
- Leuconostoc pseudomesenteroides
- Lichtheimia corymbifera †
- Lichtheimia ramosa †
- Listeria grayi
- Listeria innocua
- Listeria ivanovii
- Listeria monocytogenes
- Listeria seeligeri
- Loa loa
- Lodderomyces elongisporus †
- Lomentospora prolificans
- Lysinibacillus sphaericus (Bacillus sphaericus)
- Macrophomina phaseolina
- Madurella mycetomatis
- Malassezia dermatis
- Malassezia furfur
- Malassezia globosa
- Malassezia japonica
- Malassezia obtusa
- Malassezia pachydermatis
- Malassezia slooffiae
- Malassezia sympodialis
- Malassezia yamatoensis
- Mammaliicoccus lentus (Staphylococcus lentus)
- Mammaliicoccus sciuri (Staphylococcus sciuri)
- Mannheimia haemolytica †
- Megasphaera micronuciformis
- Merkel cell polyomavirus (Alphapolyomavirus quintihominis)
- Metarhizium anisopliae †
- Metarhizium guizhouense †
- Metarhizium robertsii †
- Meyerozyma carpophila (Candida carpophila) †
- Meyerozyma guilliermondii
- Microbacterium maritypicum
- Microbacterium oxydans
- Microbacterium paraoxydans
- Micrococcus luteus
- Micrococcus lylae
- Microsporum canis (Arthroderma otae) †
- Mobiluncus curtisii
- Mobiluncus mulieris
- Moellerella wisconsensis
- Mogibacterium timidum
- Molluscum contagiosum virus †
- Monkeypox virus †
- Moraxella atlantae
- Moraxella catarrhalis
- Moraxella lacunata
- Moraxella nonliquefaciens
- Morganella morganii
- Mucor circinelloides †
- Mucor indicus †
- Mucor irregularis †
- Mucor racemosus
- Mucor velutinosus †
- Mupapillomavirus 1
- Mupapillomavirus 2
- Mycobacterium asiaticum †
- Mycobacterium avium complex (MAC) †
- Mycobacterium celatum †
- Mycobacterium chimaera †
- Mycobacterium gastri †
- Mycobacterium genavense †
- Mycobacterium gordonae †
- Mycobacterium grossiae †
- Mycobacterium haemophilum †
- Mycobacterium heckeshornense †
- Mycobacterium intermedium †
- Mycobacterium kansasii †
- Mycobacterium kyorinense †
- Mycobacterium leprae †
- Mycobacterium lepromatosis †
- Mycobacterium malmoense †
- Mycobacterium marinum †
- Mycobacterium nebraskense †
- Mycobacterium paraffinicum †
- Mycobacterium parascrofulaceum †
- Mycobacterium scrofulaceum †
- Mycobacterium sherrisii †
- Mycobacterium shigaense †
- Mycobacterium shimoidei †
- Mycobacterium simiae †
- Mycobacterium talmoniae †
- Mycobacterium triplex †
- Mycobacterium tuberculosis complex †
- Mycobacterium xenopi †
- Mycobacteroides abscessus (Mycobacterium abscessus) †
- Mycobacteroides chelonae (Mycobacterium chelonae) †
- Mycobacteroides franklinii (Mycobacterium franklinii) †
- Mycobacteroides immunogenum (Mycobacterium immunogenum) †
- Mycobacteroides saopaulense (Mycobacterium saopaulense) †
- Mycolicibacillus koreensis (Mycobacterium koreense) †
- Mycolicibacter arupensis (Mycobacterium arupense) †
- Mycolicibacter heraklionensis (Mycobacterium heraklionense) †
- Mycolicibacter kumamotonensis (Mycobacterium kumamotonense) †
- Mycolicibacterium aurum †
- Mycolicibacterium brisbanense (Mycobacterium brisbanense) †
- Mycolicibacterium canariasense (Mycobacterium canariasense) †
- Mycolicibacterium chlorophenolicum †
- Mycolicibacterium chubuense †
- Mycolicibacterium conceptionense (Mycobacterium conceptionense) †
- Mycolicibacterium cosmeticum (Mycobacterium cosmeticum) †
- Mycolicibacterium elephantis (Mycobacterium elephantis) †
- Mycolicibacterium flavescens (Mycobacterium flavescens) †
- Mycolicibacterium fortuitum (Mycobacterium fortuitum) †
- Mycolicibacterium goodii (Mycobacterium goodii) †
- Mycolicibacterium hassiacum †
- Mycolicibacterium iranicum (Mycobacterium iranicum) †
- Mycolicibacterium llatzerense (Mycobacterium llatzerense) †
- Mycolicibacterium mageritense (Mycobacterium mageritense) †
- Mycolicibacterium mucogenicum (Mycobacterium mucogenicum) †
- Mycolicibacterium neoaurum (Mycobacterium neoaurum) †
- Mycolicibacterium novocastrense (Mycobacterium novocastrense) †
- Mycolicibacterium obuense (Mycobacterium obuense) †
- Mycolicibacterium peregrinum (Mycobacterium peregrinum) †
- Mycolicibacterium phlei (Mycobacterium phlei) †
- Mycolicibacterium septicum (Mycobacterium septicum) †
- Mycolicibacterium setense (Mycobacterium setense) †
- Mycolicibacterium smegmatis (Mycobacterium smegmatis) †
- Mycolicibacterium thermoresistibile (Mycobacterium thermoresistibile) †
- Mycolicibacterium vaccae (Mycobacterium vaccae) †
- Mycolicibacterium wolinskyi (Mycobacterium wolinskyi) †
- Mycoplasma genitalium
- Mycoplasma hominis
- Mycoplasma orale
- Mycoplasma penetrans
- Mycoplasma pneumoniae
- Mycoplasmopsis arginini (Mycoplasma arginini)
- Mycoplasmopsis fermentans (Mycoplasma fermentans)
- Myroides odoratimimus
- Myroides odoratus
- Naegleria fowleri
- Nannizzia gypsea (Microsporum gypseum) †
- Necator americanus
- Neisseria animaloris †
- Neisseria bacilliformis †
- Neisseria cinerea †
- Neisseria elongata †
- Neisseria flavescens †
- Neisseria gonorrhoeae †
- Neisseria meningitidis †
- Neisseria mucosa †
- Neisseria weaveri †
- Neorickettsia sennetsu
- Neoscytalidium dimidiatum
- Niallia circulans (Bacillus circulans)
- Nigrograna mackinnonii (Biatriospora mackinnonii)
- Nocardia abscessus †
- Nocardia africana †
- Nocardia amamiensis †
- Nocardia anaemiae †
- Nocardia aobensis †
- Nocardia araoensis †
- Nocardia arizonensis †
- Nocardia asiatica †
- Nocardia asteroides
- Nocardia beijingensis †
- Nocardia brasiliensis †
- Nocardia brevicatena †
- Nocardia caishijiensis †
- Nocardia carnea †
- Nocardia cerradoensis †
- Nocardia concava †
- Nocardia crassostreae †
- Nocardia cyriacigeorgica †
- Nocardia elegans †
- Nocardia exalbida †
- Nocardia farcinica †
- Nocardia flavorosea †
- Nocardia grenadensis †
- Nocardia harenae †
- Nocardia higoensis †
- Nocardia ignorata †
- Nocardia inohanensis †
- Nocardia kruczakiae †
- Nocardia mexicana †
- Nocardia mikamii †
- Nocardia neocaledoniensis †
- Nocardia niigatensis †
- Nocardia niwae †
- Nocardia nova †
- Nocardia otitidiscaviarum †
- Nocardia paucivorans †
- Nocardia pneumoniae †
- Nocardia pseudobrasiliensis †
- Nocardia puris †
- Nocardia rhamnosiphila †
- Nocardia sienata †
- Nocardia takedensis †
- Nocardia terpenica †
- Nocardia testacea †
- Nocardia thailandica †
- Nocardia transvalensis †
- Nocardia vermiculata †
- Nocardia veterana †
- Nocardia vinacea †
- Nocardia vulneris †
- Nocardia yamanashiensis †
- Nocardiopsis dassonvillei (Nocardia dassonvillei)
- Nupapillomavirus 1
- Ochroconis constricta
- Odoribacter splanchnicus
- Oerskovia turbata
- Oligella ureolytica
- Oligella urethralis
- Olsenella uli
- Onchocerca volvulus
- Ophiostoma piceae
- Opisthorchis viverrini
- Orf virus †
- Oribacterium sinus
- Orientia tsutsugamushi
- Orthohepadnavirus hominoidei (Hepatitis B virus)
- Oscillibacter ruminantium
- Paecilomyces variotii (Byssochlamys spectabilis) †
- Paenalcaligenes hominis
- Paenibacillus alvei
- Paeniclostridium sordellii (Clostridium sordellii)
- Pandoraea apista
- Pandoraea sputorum
- Pannonibacter phragmitetus
- Pantoea agglomerans
- Pantoea ananatis
- Parabacteroides distasonis (Bacteroides distasonis)
- Parabacteroides goldsteinii
- Parabacteroides gordonii
- Parabacteroides merdae (Bacteroides merdae)
- Paraburkholderia fungorum (Burkholderia fungorum)
- Parachlamydia acanthamoebae
- Paraclostridium bifermentans (Clostridium bifermentans)
- Paracoccidioides brasiliensis †
- Paracoccidioides lutzii †
- Paracoccus sanguinis
- Parvimonas micra
- Pasteurella bettyae †
- Pasteurella multocida †
- Pediococcus pentosaceus
- Penicillium capsulatum †
- Penicillium decumbens †
- Penicillium digitatum †
- Penicillium janthinellum †
- Peptoniphilus coxii
- Peptoniphilus harei
- Peptoniphilus indolicus
- Peptoniphilus lacrimalis
- Peptoniphilus rhinitidis
- Peptostreptococcus anaerobius
- Peptostreptococcus stomatis
- Phaeoacremonium minimum
- Phanerodontia chrysosporium (Phanerochaete chrysosporium)
- Phialophora americana (Capronia semi-immersa)
- Phocaeicola vulgatus (Bacteroides vulgatus)
- Photobacterium damselae
- Photorhabdus asymbiotica
- Photorhabdus luminescens
- Pichia kudriavzevii (Candida krusei) †
- Plasmodium cynomolgi
- Plasmodium falciparum
- Plasmodium knowlesi
- Plasmodium malariae
- Plasmodium ovale
- Plasmodium vivax
- Plesiomonas shigelloides
- Pluralibacter gergoviae
- Pneumocystis jirovecii
- Porphyromonas asaccharolytica
- Porphyromonas gingivalis
- Prevotella bivia
- Prevotella buccae
- Prevotella buccalis
- Prevotella corporis
- Prevotella denticola
- Prevotella disiens
- Prevotella intermedia
- Prevotella loescheii
- Prevotella melaninogenica
- Prevotella nigrescens
- Prevotella oralis
- Prevotella oris
- Priestia megaterium (Bacillus megaterium)
- Primate bocaparvovirus 1
- Primate bocaparvovirus 2
- Primate tetraparvovirus 1 (human PARV-4)
- Propionibacterium acidifaciens
- Propionimicrobium lymphophilum (Corynebacterium lymphophilum)
- Proteus mirabilis*
- Proteus vulgaris*
- Providencia alcalifaciens
- Providencia rettgeri
- Providencia stuartii
- Pseudescherichia vulneris (Escherichia vulneris)
- Pseudocowpox virus †
- Pseudoleptotrichia goodfellowii (Leptotrichia goodfellowii)
- Pseudomonas aeruginosa*
- Pseudomonas alcaligenes
- Pseudomonas citronellolis
- Pseudomonas fluorescens
- Pseudomonas fulva
- Pseudomonas luteola
- Pseudomonas mendocina
- Pseudomonas mosselii
- Pseudomonas oryzihabitans
- Pseudomonas putida
- Pseudoramibacter alactolyticus
- Psychrobacter phenylpyruvicus (Moraxella phenylpyruvica)
- Purpureocillium lilacinum †
- Pythium insidiosum
- Rahnella aquatilis
- Ralstonia insidiosa
- Ralstonia mannitolilytica
- Raoultella ornithinolytica
- Raoultella planticola
- Rhinocladiella mackenziei (Ramichloridium mackenziei)
- Rhinocladiella similis
- Rhizobium radiobacter (Agrobacterium tumefaciens)
- Rhizoctonia solani
- Rhizomucor miehei †
- Rhizomucor pusillus †
- Rhizopus arrhizus (Rhizopus oryzae) †
- Rhizopus delemar †
- Rhizopus microsporus †
- Rhizopus stolonifer †
- Rhodococcus fascians †
- Rhodococcus hoagii (Rhodococcus equi) †
- Rhodococcus rhodochrous †
- Rhodotorula mucilaginosa
- Rhytidhysteron rufulum
- Rickettsia akari
- Rickettsia amblyommatis
- Rickettsia australis
- Rickettsia conorii
- Rickettsia felis
- Rickettsia helvetica
- Rickettsia honei
- Rickettsia japonica
- Rickettsia massiliae
- Rickettsia monacensis
- Rickettsia parkeri
- Rickettsia prowazekii
- Rickettsia rickettsii
- Rickettsia sibirica
- Rickettsia slovaca
- Rickettsia typhi
- Robinsoniella peoriensis
- Rodentibacter pneumotropicus (Pasteurella pneumotropica) †
- Rodentolepis nana (Hymenolepis nana)
- Roseomonas cervicalis
- Roseomonas gilardii
- Roseomonas mucosa
- Rothia aeria
- Rothia dentocariosa
- Rothia kristinae (Kocuria kristinae)
- Rothia mucilaginosa
- Saksenaea oblongispora †
- Saksenaea vasiformis †
- Salmonella bongori*
- Salmonella enterica*
- Sanguibacteroides justesenii
- Scardovia wiggsiae
- Scedosporium apiospermum
- Scedosporium aurantiacum
- Scedosporium boydii
- Scedosporium dehoogii
- Schaalia cardiffensis (Actinomyces cardiffensis)
- Schaalia georgiae (Actinomyces georgiae)
- Schaalia meyeri (Actinomyces meyeri)
- Schaalia odontolytica (Actinomyces odontolyticus)
- Schaalia turicensis (Actinomyces turicensis)
- Schistosoma haematobium
- Schistosoma japonicum
- Schistosoma mansoni
- Serratia ficaria
- Serratia fonticola
- Serratia liquefaciens
- Serratia marcescens*
- Serratia odorifera
- Serratia plymuthica
- Serratia rubidaea
- Shewanella algae
- Shewanella putrefaciens
- Shimwellia blattae (Escherichia blattae)
- Siccibacter turicensis
- Slackia exigua
- Sneathia vaginalis (Leptotrichia amnionii)
- Solobacterium moorei
- Sphingobacterium spiritivorum
- Sporopachydermia quercuum †
- Sporothrix brasiliensis
- Sporothrix globosa
- Sporothrix pallida
- Sporothrix schenckii
- Stachybotrys chlorohalonata †
- Staphylococcus argenteus
- Staphylococcus arlettae
- Staphylococcus aureus*
- Staphylococcus auricularis
- Staphylococcus capitis
- Staphylococcus caprae
- Staphylococcus carnosus
- Staphylococcus chromogenes
- Staphylococcus cohnii
- Staphylococcus condimenti
- Staphylococcus epidermidis*
- Staphylococcus equorum
- Staphylococcus gallinarum
- Staphylococcus haemolyticus
- Staphylococcus hominis
- Staphylococcus hyicus
- Staphylococcus lugdunensis*
- Staphylococcus pasteuri
- Staphylococcus pettenkoferi
- Staphylococcus pseudintermedius
- Staphylococcus saprophyticus
- Staphylococcus schleiferi
- Staphylococcus simulans
- Staphylococcus warneri
- Staphylococcus xylosus
- Stenotrophomonas acidaminiphila
- Stenotrophomonas maltophilia
- Streptobacillus moniliformis
- Streptococcus acidominimus
- Streptococcus agalactiae
- Streptococcus anginosus
- Streptococcus canis
- Streptococcus constellatus
- Streptococcus cristatus
- Streptococcus dysgalactiae
- Streptococcus equi
- Streptococcus gallolyticus
- Streptococcus gordonii
- Streptococcus infantarius
- Streptococcus infantis
- Streptococcus iniae
- Streptococcus intermedius
- Streptococcus lutetiensis
- Streptococcus massiliensis
- Streptococcus mitis
- Streptococcus mutans
- Streptococcus oralis
- Streptococcus parasanguinis
- Streptococcus pasteurianus
- Streptococcus peroris
- Streptococcus pneumoniae
- Streptococcus porcinus
- Streptococcus pseudopneumoniae
- Streptococcus pyogenes
- Streptococcus sanguinis
- Streptococcus sobrinus
- Streptococcus uberis
- Streptococcus vestibularis
- Streptomyces somaliensis
- Strongyloides stercoralis
- Sutterella wadsworthensis
- Syncephalastrum racemosum †
- Taenia asiatica
- Taenia saginata
- Taenia solium
- Talaromyces amestolkiae †
- Talaromyces marneffei (Penicillium marneffei) †
- Talaromyces piceae (Penicillium piceum) †
- Talaromyces purpureogenus (Penicillium purpurogenum) †
- Talaromyces stipitatus †
- Talaromyces verruculosus (Penicillium verruculosum) †
- Tanapox virus †
- Tannerella forsythia (Bacteroides forsythus)
- Tatumella ptyseos
- Terrisporobacter othiniensis
- Thermoascus crustaceus †
- Thermomyces lanuginosus †
- Thermothelomyces thermophilus (Myceliophthora thermophila)
- Torulaspora delbrueckii †
- Toxocara canis
- Toxoplasma gondii
- Trachipleistophora hominis
- Treponema pallidum
- Trichinella
- Trichoderma harzianum †
- Trichoderma longibrachiatum †
- Trichodysplasia spinulosa-associated polyomavirus (Alphapolyomavirus octihominis)
- Trichomonas vaginalis
- Trichophyton †
- Trichosporon asahii
- Trichosporon coremiiforme
- Trichosporon faecale
- Trichosporon inkin
- Trichosporon ovoides
- Trichuris trichiura
- Tropheryma whipplei
- Trueperella bernardiae (Arcanobacterium bernardiae)
- Trueperella pyogenes (Arcanobacterium pyogenes)
- Trypanosoma brucei
- Trypanosoma cruzi
- Tsukamurella paurometabola †
- Tsukamurella pulmonis †
- Tsukamurella tyrosinosolvens †
- Ureaplasma parvum
- Ureaplasma urealyticum
- Vaccinia virus †
- Varicella-zoster virus (VZV)
- Variola virus †
- Veillonella dispar
- Veillonella montpellierensis
- Veillonella parvula
- Verruconis gallopava (Ochroconis gallopava)
- Verticillium dahliae
- Vibrio alginolyticus
- Vibrio cholerae
- Vibrio fluvialis
- Vibrio furnissii
- Vibrio metschnikovii
- Vibrio mimicus
- Vibrio parahaemolyticus
- Vibrio vulnificus
- Vittaforma corneae
- Volvariella volvacea
- Waddlia chondrophila
- Weeksella virosa
- Weissella confusa
- Weissella paramesenteroides
- Wickerhamomyces anomalus (Pichia anomala) †
- Wickerhamomyces ciferrii †
- Winkia neuii (Actinomyces neuii)
- Wohlfahrtiimonas chitiniclastica
- WU polyomavirus (Betapolyomavirus quartihominis)
- Wuchereria bancrofti
- Yaba monkey tumor virus †
- Yarrowia lipolytica †
- Yersinia enterocolitica
- Yersinia pestis
- Yersinia pseudotuberculosis
- Yokenella regensburgei
Click here To view the most up-to-date pathogen list.
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References
- Shishido, et al. BMC Infectious Diseases (2022) 22:372.
- Rossoff J et al. Open Forum Infect Dis. 2019;6(8).
- Benamu E, et al., Clin Infect Dis. 2021 Apr 19:ciab324. Epub ahead of print.
- Foong, et al. Open Forum Infectious Diseases. Vol. 9 Issue 12, December 2022, ofc652. 5. Tabak YP et al. J Clin Microbiol. 2018;56(12).